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User:TiagoLubiana/sandbox

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Candidate pages for the Wikipedia ISCB competition:


The chosen one is:

Open Biomedical Ontologies


Other possibilities:

OBO Foundry

Biological data visualization

Knowledge engineering


Wikidata list of OBO Foundry ontologies

This list is automatically generated from data in Wikidata and is periodically updated by Listeriabot.
Edits made within the list area will be removed on the next update!


title description official page
Anatomical Entity Ontology Ontology of anatomical structures that expand CARO, the Common Anatomy Reference Ontology. https://github.com/obophenotype/human-developmental-anatomy-ontology/
Beta Cell Genomics Ontology An application ontology built for beta cell genomics studies. https://github.com/obi-bcgo/bcgo
Cephalopod Ontology anatomical and developmental ontology for cephalopods https://www.ebi.ac.uk/ols/ontologies/ceph
Chemical Entities of Biological Interest Ontology of small molecular entities of biological interest http://www.ebi.ac.uk/chebi
Cigarette Smoke Exposure Ontology Ontology to describe exposure to environmental factors that might influence clinical outcomes. http://www.jbiomedsem.com/content/pdf/2041-1480-5-31.pdf
http://ctdbase.org/help/exposureHelp.jsp
Evidence & Conclusion Ontology An ontology for types evidence used to support scientific claims. http://jodischneider.com/pubs/dikr2014.pdf
https://github.com/evidenceontology/evidenceontology/
Evidence and Conclusion Ontology support assertions about things (such as scientific conclusions, gene annotations, or other statements of fact) that result from scientific research http://www.evidenceontology.org/
Gazetteer open source gazetteer constructed on ontological principles http://environmentontology.github.io/gaz/
Glycan Naming Ontology An ontology for glycans based on GlyTouCan https://github.com/glygen-glycan-data/GNOme
Human Disease Ontology ontology for describing human diseases http://www.disease-ontology.org
Infectious Disease Ontology A set of ontologies related to infectious diseases. http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology
Malaria Ontology An ontology for concepts related to malaria http://www.ncbi.nlm.nih.gov/pubmed/20698959
https://www.vectorbase.org/ontology-browser
Mosquito gross anatomy ontology An ontology for the anatomy of mosquitoes. http://anobase.vectorbase.org
Mouse gross anatomy and development, timed Ontology of anatomical structures of the mouse (Mus musculus). http://emouseatlas.org
Name Reaction Ontology An ontology for organic reactions in organic synthesis. https://github.com/rsc-ontologies/rxno
Neuroscience Information Framework Cell Ontology Ontology to describe cell types in animals in general. http://bioportal.bioontology.org/ontologies/NIFCELL?p=classes&conceptid=root
https://github.com/obophenotype/cell-ontology
Ontologized MIABIS An ontological version of MIABIS (Minimum Information About BIobank data Sharing) https://github.com/OMIABIS/omiabis-dev
Ontology for Parasite LifeCycle ontology http://code.google.com/p/opl-ontology
https://github.com/OPL-ontology/OPL
Pathogen Transmission Ontology OBO ontology of pathogen transmission processes https://github.com/DiseaseOntology/PathogenTransmissionOntology
Software Ontology An ontology to describe software applications with a focus on bioinformatics tools. http://jbiomedsem.biomedcentral.com/articles/10.1186/2041-1480-5-25
https://github.com/allysonlister/swo
The Data Use Ontology Ontology for conditions of data use. https://github.com/EBISPOT/DUO
The Drug-Drug Interactions Ontology Ontology for drug-drug interactions. http://labda.inf.uc3m.es/doku.php?id=es:labda_dinto
The Oral Health and Disease Ontology An ontology for the content of teeth-related health records. https://purl.obolibrary.org/obo/ohd/home
Tick Anatomy Ontology An ontology for the anatomy of the tick families Ixodidae and Argassidae. https://www.vectorbase.org/ontology-browser
Vaccination Informed Consent Ontology An ontology of clinical informed consents http://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0062-4
https://github.com/ICO-ontology/ICO
Vaccine Ontology An ontology for concepts related to vaccines and vaccination https://violinet.org/vaccineontology/
eagle-i resource ontology An ontology of research equipment, protocols and consumables. . https://open.med.harvard.edu/wiki/display/eaglei/Ontology
microRNA Ontology An ontology for use with miRNA databases. http://code.google.com/p/mirna-ontology/
End of auto-generated list.