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User:Jts1882/clade/cladex

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This page is currently being used to test brackets and labels to the right of the cladogram using |grouplabel= with the |bar=, |barbegin= and |barend= parameters. Comparisons are made with the {{bar label}} method.

This page uses {{cladeN}} in the examples so as to us the sandbox module. Also note this page was originally used to test cladograms made using the {{Cladex}} so will have cladograms with {{cladeNx}}. These should be removed.

Comparing barlabel and grouplabel

[edit]

Plantae definitions

[edit]
Archaeplastida 

Rhodophyta (red algae)




Glaucophyta (glaucophyte algae)


Green plants


Mesostigmatophyceae




Chlorokybophyceae



Spirotaenia






Chlorophyta


Streptophyta

 




Charales (stoneworts)




 



land plants or embryophytes






(including Green algae)


groups traditionally
included in the "algae"

Grouplabel version

Archaeplastida 

Rhodophyta (red algae)




Glaucophyta (glaucophyte algae)


Green plants


Mesostigmatophyceae




Chlorokybophyceae



Spirotaenia






Chlorophyta


Streptophyta

 




Charales (stoneworts)




 



land plants or embryophytes






(including Green algae)

groups traditionally
included in the "algae"

Green plants

[edit]
Viridiplantae


Chlorokybophyta



Mesostigmatophyta




Chlorobionta

Chlorophyta


Streptobionta

Klebsormidiophyta


Phragmoplastophyta

Charophyta Rabenhorst 1863 emend. Lewis & McCourt 2004 (Stoneworts)




Chaetosphaeridiales Marin & Melkonian 1999



Coleochaetophyta




Zygnematophyta


Embryobiotes

Marchantiophyta (Liverworts)


Stomatophyta

Bryophyta (True mosses)




Anthocerotophyta (Non-flowering hornworts)


Polysporangiophyta

Horneophyta




Aglaophyta



Tracheophyta (Vascular Plants)













Grouplabel version

Viridiplantae


Chlorokybophyta



Mesostigmatophyta




Chlorobionta

Chlorophyta


Streptobionta

Klebsormidiophyta


Phragmoplastophyta

Charophyta Rabenhorst 1863 emend. Lewis & McCourt 2004 (Stoneworts)




Chaetosphaeridiales Marin & Melkonian 1999



Coleochaetophyta




Zygnematophyta


Embryobiotes

Marchantiophyta (Liverworts)


Stomatophyta

Bryophyta (True mosses)




Anthocerotophyta (Non-flowering hornworts)


Polysporangiophyta

Horneophyta




Aglaophyta



Tracheophyta (Vascular Plants)












Green algae

Modified grouplabel version

Viridiplantae


Chlorokybophyta



Mesostigmatophyta




Chlorobionta

Chlorophyta


Streptobionta

Klebsormidiophyta


Phragmoplastophyta

Charophyta Rabenhorst 1863 emend. Lewis & McCourt 2004 (Stoneworts)




Chaetosphaeridiales Marin & Melkonian 1999



Coleochaetophyta




Zygnematophyta



 


Embryobiotes

Marchantiophyta (Liverworts)

"Bryophytes"

Stomatophyta

Bryophyta (True mosses)




Anthocerotophyta (Non-flowering hornworts)


Polysporangiophyta

Horneophyta




Aglaophyta



Tracheophyta (Vascular Plants)












Green algae

Grouplabel version (another modified version

Viridiplantae


Chlorokybophyta



Mesostigmatophyta




Chlorobionta

Chlorophyta


Streptobionta

Klebsormidiophyta


Phragmoplastophyta

Charophyta Rabenhorst 1863 emend. Lewis & McCourt 2004 (Stoneworts)




Chaetosphaeridiales Marin & Melkonian 1999



Coleochaetophyta




Zygnematophyta


Embryobiotes

Marchantiophyta (Liverworts)


Stomatophyta

Bryophyta (True mosses)




Anthocerotophyta (Non-flowering hornworts)


Polysporangiophyta

Horneophyta




Aglaophyta



Tracheophyta (Vascular Plants)












Green algae












"Bryophytes"

Ferns

[edit]
Tracheophyta

Lycopodiophytes (club mosses, spike mosses, quillworts)


Euphyllophytes

Spermatophytes (seed plants)


Ferns

Psilotopsida

Psilotales (whisk ferns)



Ophioglossales (grapeferns etc.)



Equisetopsida

Equisetales (horsetails)





Marattiopsida

Marattiales



Polypodiopsida

Osmundales




Hymenophyllales (filmy ferns)




Gleicheniales




Schizaeales




Salviniales (heterosporous) 




Cyatheales (tree ferns)



Polypodiales












Grouplabel version

Tracheophyta


Lycopodiophytes (club mosses, spike mosses, quillworts)



Euphyllophytes

Spermatophytes (seed plants)


Ferns

Psilotopsida

Psilotales (whisk ferns)



Ophioglossales (grapeferns etc.)



Equisetopsida

Equisetales (horsetails)






Eusporangiate
Ferns


Marattiopsida

Marattiales



Polypodiopsida

Osmundales




Hymenophyllales (filmy ferns)




Gleicheniales




Schizaeales




Salviniales (heterosporous)




Cyatheales (tree ferns)



Polypodiales











Leptosporangiate
Ferns




Grouplabel version (modified)

Tracheophyta


Lycopodiophytes (club mosses, spike mosses, quillworts)

"primative ferns"


Euphyllophytes
Ferns

Psilotopsida

Psilotales (whisk ferns)



Ophioglossales (grapeferns etc.)



Equisetopsida

Equisetales (horsetails)



Eusporangiate
Ferns


Marattiopsida

Marattiales



Polypodiopsida

Osmundales




Hymenophyllales (filmy ferns)




Gleicheniales




Schizaeales




Salviniales (heterosporous)




Cyatheales (tree ferns)



Polypodiales








Leptosporangiate
Ferns

Ferns


Spermatophytes (seed plants)

Seed plants


vascular plants

Tetrapodomorpha

[edit]

Template {{barlabel}} version

Tetrapodomorpha

Kenichthys



Rhizodontida

Barameda



Gooloogongia






Gogonasus



Osteolepis







Megalichthys



Cladarosymblema




Ectosteorhachis





Medoevia






Koharolepis



Canowindra




Beelarongia





Gyroptychius



Tristichopteridae





Eusthenodon



Mandageria




Cabonnichthys




Platycephalichthys




Jarvikina




Eusthenopteron



Tristichopterus





Panderichthys


Tetrapoda

Acanthostega



Ichthyostega



red node



node 15 (test)


(plus tests)








(tetrapods)
Osteolepidida

Grouplabel version

Tetrapodomorpha

Kenichthys



Rhizodontida

Barameda



Gooloogongia






Gogonasus



Osteolepis







Megalichthys



Cladarosymblema




Ectosteorhachis





Medoevia






Koharolepis



Canowindra




Beelarongia





Gyroptychius



Tristichopteridae





Eusthenodon



Mandageria




Cabonnichthys




Platycephalichthys




Jarvikina




Eusthenopteron



Tristichopterus





Panderichthys


Tetrapoda

Acanthostega



Ichthyostega



red node



node 15 (test)


(plus tests)






Osteolepidida











(tetrapods)

Experiments with grouplabel

[edit]

Old experiment on Clade and Cladex differences

[edit]

commented out to prevent clash of CSS on page


Simple version using relative position in group label

[edit]
  • Note the whole table cell is shifted, not just the grouplabel text
Tetrapodomorpha

Kenichthys



Rhizodontida

Barameda



Gooloogongia




GL1

Gogonasus



Osteolepis


grouplabel1 (position:relative;top:8em; relative to GL1)

GL2



Megalichthys



Cladarosymblema




Ectosteorhachis





Medoevia






Koharolepis



Canowindra




Beelarongia





Gyroptychius



Tristichopteridae





Eusthenodon



Mandageria




Cabonnichthys




Platycephalichthys




Jarvikina




Eusthenopteron



Tristichopterus





Panderichthys


Tetrapoda

Acanthostega



Ichthyostega



red node



node 15 (test)


(plus tests)





grouplabel2 (position:relative;top:8em;left:3em; relative to GL2)



(tetrapods)

Positioning of grouplabel markers

[edit]
  • uses absolute positioning of markers (<td>) within the grouplabel cell (<td>)
    • uses "position:relative;" for the whole grouplabel cell (<td>)
    • uses position:absolute; for each marker (<td>)
    • position is determined by the bottom, top, left and right CSS properties
      • top:8em; moves top margin 8em from default position (i.e. shifts down); likewise bottom shifts up .
      • left:3em; moves left margin 3em (i.e. shifts right); likewise right shifts left.


Tetrapodomorpha

Kenichthys



Rhizodontida

Barameda



Gooloogongia




GL1

Gogonasus



Osteolepis


grouplabel1 (note that this extra text is just to expand the cell below box demonstrating div marker position)

GL2



Megalichthys



Cladarosymblema




Ectosteorhachis





Medoevia






Koharolepis



Canowindra




Beelarongia





Gyroptychius



Tristichopteridae





Eusthenodon



Mandageria




Cabonnichthys




Platycephalichthys




Jarvikina




Eusthenopteron



Tristichopterus





Panderichthys


Tetrapoda

Acanthostega 



Ichthyostega



red node



node 15 (test)


(plus tests)





grouplabel2 (no positioning)
top:0%;right:0%;
top:0%;left:0%;
top:5%;
top:25%;
bottom:50%;right:50%;
top:50%;left:50%;
top:75%;
top:95%;
top:100%;
bottom:75%;right:50%;
bottom:0%;right:0%;
bottom:0%;left:0%;



(tetrapods)

Test using {{clade labels}}

Note: using invoke of module for testing

Tetrapodomorpha

Kenichthys



Rhizodontida

Barameda



Gooloogongia




GL1

Gogonasus



Osteolepis


grouplabel1 (note that this extra text is just to expand the cell below box demonstrating div marker position)

GL2



Megalichthys



Cladarosymblema




Ectosteorhachis





Medoevia






Koharolepis



Canowindra




Beelarongia





Gyroptychius



Tristichopteridae





Eusthenodon



Mandageria




Cabonnichthys




Platycephalichthys




Jarvikina




Eusthenopteron



Tristichopterus





Panderichthys


Tetrapoda

Acanthostega 



Ichthyostega



red node



node 15 (test)


(plus tests)





grouplabel2 (no positioning)
top:0%;right:0%;
top:0%;left:0%;
top:5%;
top:25%;
bottom:50%;right:50%;
top:50%;left:50%;
top:75%;
top:95%;
top:100%;
bottom:75%;right:50%;
bottom:0%;right:0%;
bottom:0%;left:0%;



(tetrapods)

Using an HTML table within grouplabel

[edit]
  • Proof of principle demo of table nested in grouplabel (mimics barlabel template functionality)
    • intent: use template for this table (avoid parameters with two levels in indices)
  • Note that the group label cells are sister cells to those containing clade elements so won't break the structure, although those nested in the structure could stretch outer sections.
Archaeplastida 


Rhodophyta (red algae)




Glaucophyta (glaucophyte algae)


Green plants


Mesostigmatophyceae




Chlorokybophyceae



Spirotaenia






Chlorophyta


Streptophyta

 




Charales (stoneworts)




 



land plants or embryophytes






(including Green algae)

red algae
glaucophyte algae
 
 
 
green algae
 
 
 
 

groups traditionally included in the "algae"

Reverse clade using cladeN

[edit]
 

jaguar




leopard



lion




    

leopard



jaguar



lion





 


And using Newick:

lion



jaguar



leopard





siberian



javan



bengal



tiger

snow leopard





panthera